Search results for "MESH: Bacteria"

showing 10 items of 13 documents

Consequences of organ choice in describing bacterial pathogen assemblages in a rodent population

2017

SUMMARYHigh-throughput sequencing technologies now allow for rapid cost-effective surveys of multiple pathogens in many host species including rodents, but it is currently unclear if the organ chosen for screening influences the number and identity of bacteria detected. We used 16S rRNA amplicon sequencing to identify bacterial pathogens in the heart, liver, lungs, kidneys and spleen of 13 water voles (Arvicola terrestris) collected in Franche-Comté, France. We asked if bacterial pathogen assemblages within organs are similar and if all five organs are necessary to detect all of the bacteria present in an individual animal. We identified 24 bacteria representing 17 genera; average bacterial…

0301 basic medicineOperational taxonomic unitMESH: Sequence Analysis DNAEpidemiologyMESH : PrevalenceMESH : Tissue DistributionRodent DiseasesRNA Ribosomal 16Sbacterial pathogensPrevalenceMESH : DNA BacterialTissue DistributionMESH: AnimalsPathogen[SDV.EE]Life Sciences [q-bio]/Ecology environmenteducation.field_of_studybiologyEcologyArvicolinaeMicrobiotaMESH : Rodent Diseases3. Good healthMESH: RNA Ribosomal 16SInfectious DiseasesArvicolinaeFrancerodent-borne pathogenDNA Bacterial030106 microbiologyPopulationShort ReportZoology[ SDV.EE ] Life Sciences [q-bio]/Ecology environment03 medical and health sciencesAnimalsMESH: MicrobiotaMESH : BacteriaMESH: Tissue DistributionArvicola terrestriseducationMESH : FranceMESH: Prevalence[ SDE.BE ] Environmental Sciences/Biodiversity and EcologyBacteriaHost (biology)tissue selectionBacteria PresentSequence Analysis DNAMESH: Arvicolinaebiology.organism_classificationMESH: DNA BacterialMESH: FranceMESH : ArvicolinaeMESH : RNA Ribosomal 16SMESH: BacteriaHigh-Throughput Sequencing030104 developmental biologyMESH : MicrobiotaSpecies richnessMESH: Rodent DiseasesMESH : Animals[SDE.BE]Environmental Sciences/Biodiversity and EcologyBacteriaMESH : Sequence Analysis DNA
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Changes in membrane lipid composition in ethanol- and acid-adapted Oenococcus oeni cells: characterization of the cfa gene by heterologous complement…

2008

International audience; Cyclopropane fatty acid (CFA) synthesis was investigated in Oenococcus oeni. The data obtained demonstrated that acid-grown cells or cells harvested in the stationary growth phase showed changes in fatty acid composition similar to those of ethanol-grown cells. An increase of the CFA content and a decrease of the oleic acid content were observed. The biosynthesis of CFAs from unsaturated fatty acid phospholipids is catalysed by CFA synthases. Quantitative real-time-PCR experiments were performed on the cfa gene of O. oeni, which encodes a putative CFA synthase. The level of cfa transcripts increased when cells were harvested in stationary phase and when cells were gr…

CyclopropanesMESH: Hydrogen-Ion ConcentrationTranscription GeneticMESH: Gram-Positive Coccimedicine.disease_causechemistry.chemical_compoundMESH: CyclopropanesCloning MolecularMESH: Bacterial ProteinsOenococcus oeni0303 health sciencesMESH: Gene Expression Regulation BacterialMESH: Genetic Complementation TestbiologyStrain (chemistry)MESH: Escherichia coliFatty AcidsHydrogen-Ion ConcentrationMESH: Fatty AcidsGram-Positive CocciComplementationRNA BacterialBiochemistryMESH: RNA BacterialMESH: EthanolMESH: Sequence AlignmentMicrobiologycomplex mixturesMembrane Lipids03 medical and health sciencesBacterial ProteinsMESH: MethyltransferasesEscherichia colimedicineMESH: Cloning Molecular[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyCyclopropane fatty acidEthanol metabolismEscherichia coliUnsaturated fatty acid030304 developmental biologyEthanol030306 microbiologyMESH: Transcription GeneticGenetic Complementation TestMESH: Oleic AcidGene Expression Regulation BacterialMethyltransferasesbiology.organism_classificationOleic acidchemistryMESH: Membrane LipidsSequence AlignmentOleic Acid
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Listeria monocytogenes EGD-e biofilms: no mushrooms but a network of knitted chains.

2008

ABSTRACT Listeria monocytogenes is a food pathogen that can attach on most of the surfaces encountered in the food industry. Biofilms are three-dimensional microbial structures that facilitate the persistence of pathogens on surfaces, their resistance toward antimicrobials, and the final contamination of processed goods. So far, little is known about the structural dynamics of L. monocytogenes biofilm formation and its regulation. The aims of this study were, by combining genetics and time-lapse laser-scanning confocal microscopy (LSCM), (i) to characterize the structural dynamics of L. monocytogenes EGD-e sessile growth in two nutritional environments (with or without a nutrient flow), and…

Image ProcessingMESH : Analysis of Variance[ SDV.MP.BAC ] Life Sciences [q-bio]/Microbiology and Parasitology/BacteriologyMESH : Green Fluorescent Proteinsmedicine.disease_causeMESH: Listeria monocytogenesApplied Microbiology and BiotechnologyBacterial Adhesionlaw.inventionGreen fluorescent proteinPlasmidComputer-AssistedlawGenes ReporterImage Processing Computer-AssistedMESH : Bacterial ProteinsMESH: Microscopy ConfocalPathogenMESH: Bacterial Proteins2. Zero hunger0303 health sciencesMicroscopyMicroscopy ConfocalPhotobleachingEcologybiologyMESH: KineticsMESH : Genes ReporterMESH: Image Processing Computer-AssistedMESH : BiofilmsConfocalMESH : KineticsMESH: PhotobleachingMESH : Image Processing Computer-AssistedBiotechnologyPlasmidsMESH : Bacterial AdhesionConfocalGreen Fluorescent ProteinsMESH: BiofilmsMESH : PhotobleachingMicrobiology03 medical and health sciencesMESH: Gene Expression ProfilingMESH: Green Fluorescent ProteinsListeria monocytogenesBacterial ProteinsConfocal microscopyMESH: PlasmidsMESH: Analysis of VariancemedicineMESH: Bacterial AdhesionMESH : Microscopy ConfocalReporter030304 developmental biologyAnalysis of Variance030306 microbiologyMESH : Gene Expression ProfilingGene Expression ProfilingMESH: Genes ReporterBiofilmbiochemical phenomena metabolism and nutritionbiology.organism_classification[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/BacteriologyListeria monocytogenesCulture MediaKineticsGenesMESH : PlasmidsBiofilmsMESH: Culture MediaFood MicrobiologyMESH : Culture MediaMESH : Listeria monocytogenesBacteriaFood ScienceApplied and environmental microbiology
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Agr system of Listeria monocytogenes EGD-e: role in adherence and differential expression pattern.

2007

ABSTRACT In this study, we investigated the agrBDCA operon in the pathogenic bacterium Listeria monocytogenes EGD-e. In-frame deletion of agrA and agrD resulted in an altered adherence and biofilm formation on abiotic surfaces, suggesting the involvement of the agr system of L. monocytogenes during the early stages of biofilm formation. Real-time PCR experiments indicated that the transcript levels of agrBDCA depended on the stage of biofilm development, since the levels were lower after the initial attachment period than during biofilm growth, whereas transcription during planktonic growth was not growth phase dependent. The mRNA quantification data also suggested that the agr system was a…

MESH : RNA MessengerTranscription GeneticOperon[ SDV.MP.BAC ] Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriologymedicine.disease_causeMESH: Listeria monocytogenesApplied Microbiology and BiotechnologyBacterial AdhesionRapid amplification of cDNA endsTranscription (biology)MESH : Bacterial ProteinsMESH : DNA BacterialMESH: Bacterial Proteins0303 health sciencesMESH : Trans-ActivatorsMESH: Gene Expression Regulation BacterialEcologycell-to-cell communicationMESH : BiofilmsBiotechnologyMESH : Gene Expression Regulation BacterialDNA BacterialMESH : Bacterial AdhesionMESH: Trans-ActivatorsGenetics and Molecular BiologyMESH: BiofilmsBiologyagr systemMicrobiology03 medical and health sciencesListeria monocytogenesBacterial ProteinsmedicineMESH: Bacterial AdhesionRNA MessengerGene030304 developmental biologyMESH: RNA MessengerMessenger RNA030306 microbiologyMESH: Transcription GeneticBiofilmMESH : Transcription GeneticGene Expression Regulation Bacterialbiochemical phenomena metabolism and nutritionbiology.organism_classificationMolecular biologyMESH: DNA Bacterial[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/BacteriologyListeria monocytogenesBiofilmsbiofilm formationTrans-ActivatorsMESH : Listeria monocytogenesBacteriaFood ScienceApplied and environmental microbiology
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Virulent synergistic effect between Enterococcus faecalis and Escherichia coli assayed by using the Caenorhabditis elegans model.

2008

5 pages; International audience; BACKGROUND: The role of enterococci in the pathogenesis of polymicrobial infections is still debated. The purpose of this study was to evaluate the effect of virulent enterococci in the presence or absence of Escherichia coli strains in the in vivo Caenorhabditis elegans model. PRINCIPAL FINDINGS: This study demonstrated that there was a synergistic effect on virulence when an association of enterococci and E. coli (LT50 = 1.6 days+/-0.1 according to the tested strains and death of nematodes in 4 days+/-0.5) was tested in comparison with enterococci alone (LT50 = 4.6 days+/-0.1 and death in 10.4 days+/-0.6) or E. coli alone (LT50 = 2.1+/-0.9 and deaths 6.6+/…

MESH : Virulence FactorsInfectious Diseases/Gastrointestinal InfectionsMESH : Escherichia colilcsh:MedicineMESH : Genotypemedicine.disease_causeMESH: Regression AnalysisPathogenesisMESH: GenotypeInfectious Diseases/Bacterial InfectionsMESH : Regression AnalysisGenotype[ SDV.EE.IEO ] Life Sciences [q-bio]/Ecology environment/SymbiosisEnterococcus faecalis[ SDV.IMM ] Life Sciences [q-bio]/ImmunologyMESH: AnimalsMESH : Anti-Bacterial AgentsMESH : Enterococcus faecalislcsh:ScienceCaenorhabditis elegans0303 health sciencesMultidisciplinarybiologyMESH: Escherichia coliBacterial Infections3. Good healthAnti-Bacterial AgentsMicrobiology/Immunity to InfectionsMESH : Bacterial InfectionsGastroenterology and Hepatology/Gastrointestinal Infections[SDV.IMM]Life Sciences [q-bio]/ImmunologyRegression AnalysisMicrobiology/Cellular Microbiology and PathogenesisResearch ArticleMESH: Enterococcus faecalis[SDV.IMM] Life Sciences [q-bio]/ImmunologyGenotypeMESH: Bacterial InfectionsVirulence FactorsVirulenceEnterococcus faecalisMicrobiologyMESH : Caenorhabditis elegans03 medical and health sciencesIn vivoMESH: Anti-Bacterial AgentsMESH: Caenorhabditis elegansmedicineEscherichia coliAnimalsCaenorhabditis elegansEscherichia coli030304 developmental biologyMESH: Virulence Factors030306 microbiologylcsh:RMicrobiology/Medical Microbiology[SDV.EE.IEO] Life Sciences [q-bio]/Ecology environment/Symbiosisbiology.organism_classificationMESH : Disease Models AnimalDisease Models AnimalEnterococcuslcsh:QMESH : AnimalsMESH: Disease Models Animal[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/SymbiosisPloS one
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Early mitochondrial dysfunction, superoxide anion production, and DNA degradation are associated with non-apoptotic death of human airway epithelial …

2002

It has been shown that bacterial exoproducts may induce airway epithelium injury. During the epithelial repair process, the respiratory epithelial cells no more establish tight junctional intercellular complexes and may be particularly susceptible to bacterial virulence factors. In this study, we analyzed the effect of Pseudomonas aeruginosa exotoxin A (ETA) at different periods of time and concentrations on 16 HBE 14o(-) human bronchial epithelial cells in culture conditions inducing a phenotype of repairing cells. ETA treatment for 24 and 48 h led to the killing of 40.0 +/- 5.7% and 79.0 +/- 1.4% of the cells, respectively, as determined by the dimethylthiazole 2,5 diphenyl tetrazolium br…

MESH: Cell DeathMESH: ADP Ribose TransferasesMESH : DNAClinical BiochemistryCellApoptosisMESH : Dose-Response Relationship DrugMitochondrion[SDV.MHEP.PSR]Life Sciences [q-bio]/Human health and pathology/Pulmonology and respiratory tractMembrane PotentialsMESH: Dose-Response Relationship Drugchemistry.chemical_compoundSuperoxidesMESH: Intracellular MembraneMESH : DNA FragmentationRespiratory systemEnzyme InhibitorsCells CulturedADP Ribose TransferasesMESH : Cell SurvivalCell DeathSuperoxideMESH: DNAMESH: BronchiCaspase InhibitorsMESH : BronchiMitochondriaMESH : Epithelial Cellsmedicine.anatomical_structureMESH: Cell SurvivalMESH: Enzyme InhibitorsMESH: Epithelial CellsMESH : ADP Ribose TransferasesIntracellularMESH: Cells CulturedPulmonary and Respiratory MedicineProgrammed cell deathCell SurvivalVirulence FactorsBacterial ToxinsExotoxinsBronchiDNA FragmentationRespiratory MucosaBiologyMicrobiologyNecrosisNasal PolypsMESH : Cells CulturedmedicineHumansMESH: DNA FragmentationMESH : Intracellular MembraneMolecular BiologyMESH : Enzyme InhibitorsMESH: HumansMESH: CaspasesDose-Response Relationship DrugMESH: ApoptosisMESH : HumansEpithelial CellsCell BiologyDNAIntracellular MembranesMESH: ExotoxinschemistryMESH: Bacterial ToxinsApoptosisMESH : ExotoxinsMESH : Cell DeathMESH : Bacterial ToxinsRespiratory epithelium[SDV.MHEP.PSR] Life Sciences [q-bio]/Human health and pathology/Pulmonology and respiratory tractMESH : CaspasesMESH : Apoptosis[ SDV.MHEP.PSR ] Life Sciences [q-bio]/Human health and pathology/Pulmonology and respiratory tract
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Evolutionary Dissection of the Dot/Icm System Based on Comparative Genomics of 58 Legionella Species

2019

14 páginas, 2 figuras, 2 tablas

MESH: Selection GeneticLegionella pneumophilaMESH: Bacterial Proteins/metabolism*Negative selectionPositive-selectionDot/Icm systemMESH: PhylogenyNegative-selectionPhylogenyMESH: Evolution MolecularRecombination Genetic0303 health sciencesEffectorMESH: GenomicsGenomics3. Good healthCell biologypositive-selectionDiversifying-selectionMESH: Recombination GeneticMESH: Membrane ProteinsResearch ArticleSignal peptidenegative-selectionEvolutionLegionellaMESH: Carrier ProteinsBiologyMESH: Bacterial Proteins/geneticsEvolution MolecularType IV Secretion Systems03 medical and health sciencesdiversifying-selectionMESH: Type IV Secretion Systems*Bacterial Proteins[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]evolutionGeneticsSecretionSelection GeneticEcology Evolution Behavior and SystematicsMESH: Legionella/classification030304 developmental biologyComparative genomicsMESH: Legionella/metabolism030306 microbiologyMESH: Legionella/geneticsMembrane ProteinsPeriplasmic spacebiology.organism_classificationCytoplasmCarrier Proteins
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Dynamics and identification of soil microbial populations actively assimilating carbon from 13C-labelled wheat residue as estimated by DNA- and RNA-S…

2007

International audience; This work is the first report on the use of DNA-, RNA-SIP approaches to elucidate the dynamics and the diversity of bacterial populations actively assimilating C derived from plant residues labelled at more than 90% (13)C. Wheat-residues, were incorporated and incubated into soil microcosms for 28 days. At the end of the incubation time, no more than 55% of the total CO(2) released was (13)C-labelled, suggesting the occurrence of an important priming effect process. After 7 days, more than 30% of the whole DNA extracted were labelled, allowing an efficient separation of labelled from unlabelled DNA using density gradient centrifugation. The genetic structure of bacte…

MESH: Sequence Analysis DNAMESH: Biodegradation EnvironmentalMESH : Carbon Radioisotopes[SDU.STU.GC]Sciences of the Universe [physics]/Earth Sciences/GeochemistryMESH : EcosystemRNA Ribosomal 16SMESH : DNA BacterialMESH: EcosystemCarbon RadioisotopesMESH: Carbon RadioisotopesTriticumSoil Microbiology2. Zero hunger0303 health sciencesCarbon IsotopesbiologyPlanctomycetesBacterial04 agricultural and veterinary sciencesMESH: RNA Ribosomal 16S[ SDE.MCG ] Environmental Sciences/Global ChangesRNA BacterialBiodegradation EnvironmentalBiodegradationMESH : Carbon IsotopesProteobacteriaMESH: RNA BacterialSoil microbiologySequence AnalysisDNA Bacterial16SRibosomal Intergenic Spacer analysis[SDE.MCG]Environmental Sciences/Global ChangesMESH : Biodegradation EnvironmentalMESH : Soil Microbiology[ SDV.SA.SDS ] Life Sciences [q-bio]/Agricultural sciences/Soil studyMESH: Triticum[SDV.SA.SDS]Life Sciences [q-bio]/Agricultural sciences/Soil studyMicrobiologyActinobacteriaEnvironmental03 medical and health sciencesMESH : Triticum[SDV.EE.ECO]Life Sciences [q-bio]/Ecology environment/EcosystemsBotanyMESH : BacteriaGemmatimonadetesEcology Evolution Behavior and SystematicsEcosystemRibosomal[SDV.GEN]Life Sciences [q-bio]/GeneticsBacteria030306 microbiologySoil organic matterMESH: Carbon IsotopesSequence Analysis DNADNAMESH : RNA BacterialRibosomal RNA[ SDU.STU.GC ] Sciences of the Universe [physics]/Earth Sciences/Geochemistrybiology.organism_classificationMESH: DNA Bacterial[ SDV.EE.ECO ] Life Sciences [q-bio]/Ecology environment/EcosystemsMESH : RNA Ribosomal 16SMESH: BacteriaMESH: Soil Microbiology040103 agronomy & agriculture0401 agriculture forestry and fisheriesRNA[ SDV.GEN ] Life Sciences [q-bio]/GeneticsMESH : Sequence Analysis DNA
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Eubacterial PCR for Bacterial Detection and Identification in 100 Acute Postcataract Surgery Endophthalmitis

2008

International audience; PURPOSE: To evaluate eubacterial PCR compared with conventional cultures for detection and identification of bacterial agents in ocular samples from patients with acute postcataract endophthalmitis. METHODS: Broad-range eubacterial PCR amplification was used, followed by direct DNA sequencing in ocular samples (aqueous humor, vitreous samples from tap or vitrectomy) from 100 consecutive patients presenting with acute postcataract endophthalmitis. Bacterial cultures were performed on the same ocular samples by using traditional methods (brain-heart infusion broth). RESULTS: At the time of admission, the detection rate was not significantly different between cultures a…

MaleMESH: Sequence Analysis DNAMicrobiological culturegenetic structuresmedicine.medical_treatmentAntibioticsVitrectomy[ SDV.MP.BAC ] Life Sciences [q-bio]/Microbiology and Parasitology/BacteriologyMESH: Bacteriological TechniquesPolymerase Chain ReactionEye Infections Bacteriallaw.inventionPostoperative Complications0302 clinical medicineEndophthalmitislawRNA Ribosomal 16SMESH: Postoperative ComplicationsMedicineProspective StudiesComputingMilieux_MISCELLANEOUSPolymerase chain reactionMESH: AgedEndophthalmitis0303 health sciencesbiologyMESH: Eye Infections Bacterial3. Good healthMESH: RNA Ribosomal 16Smedicine.anatomical_structureAcute DiseaseMESH: Acute DiseaseFemaleDNA BacterialPars planamedicine.medical_specialtymedicine.drug_classMESH: Aqueous HumorAqueous Humor03 medical and health sciencesHumansMESH: Endophthalmitis[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyAgedBacteriological TechniquesPhacoemulsificationMESH: HumansBacteria030306 microbiologybusiness.industryMESH: Vitreous BodyMESH: Polymerase Chain ReactionSequence Analysis DNAEye infectionbiology.organism_classificationmedicine.diseaseMESH: DNA Bacterial[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/BacteriologyMESH: MaleMESH: Prospective Studieseye diseasesSurgeryVitreous BodyMESH: Bacteria030221 ophthalmology & optometrysense organs[SDV.MP.BAC] Life Sciences [q-bio]/Microbiology and Parasitology/BacteriologybusinessMESH: FemaleBacteriaMESH: PhacoemulsificationInvestigative Opthalmology & Visual Science
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Between a rock and a soft place: the role of viruses in lithification of modern microbial mats.

2021

10 pages; International audience; Stromatolites are geobiological systems formed by complex microbial communities, and fossilized stromatolites provide a record of some of the oldest life on Earth. Microbial mats are precursors of extant stromatolites; however, the mechanisms of transition from mat to stromatolite are controversial and are still not well understood. To fully recognize the profound impact that these ecosystems have had on the evolution of the biosphere requires an understanding of modern lithification mechanisms and how they relate to the geological record. We propose here viral mechanisms in carbonate precipitation, leading to stromatolite formation, whereby viruses directl…

Microbiology (medical)Geologic SedimentsBiogeochemical cycleviral lifestyleEarth sciencevirus–host interactionsGeologic recordMicrobiologyMESH: Host-Parasite InteractionsHost-Parasite InteractionsMESH: Viruses03 medical and health sciencesGeologic time scalebacteriophageVirologylytic/lysogenic cyclevirusesMicrobial matstromatoliteLithification030304 developmental biologyearly Earth0303 health sciencesBacteriabiology030306 microbiologyMESH: Virus Physiological PhenomenamicrobialitesBiosphereexopolymeric substances (EPS)MESH: Geologic Sedimentsbiology.organism_classificationEarly Earthmicrobial matMESH: BacteriaInfectious Diseases[SDV.MP]Life Sciences [q-bio]/Microbiology and ParasitologyStromatolite13. Climate actionCRISPRbiosignaturesVirus Physiological Phenomena
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